Detailed information of SNP:
|
SNP ID:
sf0216477805(Gbrowse)
Chromosome: chr02 Position: 16477805 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.29% | 47.71% |
| All Indica | 799 | 74.47% | 25.53% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216477805 | C->T | LOC_Os02g27830(LOC_Os02g27830.1) | Synonymous |