Detailed information of SNP:
|
SNP ID:
sf0216496602(Gbrowse)
Chromosome: chr02 Position: 16496602 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 69.50% | 30.50% |
| All Indica | 795 | 98.62% | 1.38% |
| All Japonica | 496 | 17.34% | 82.66% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216496602 | A->G | LOC_Os02g27880(LOC_Os02g27880.1) | INTRON |