Detailed information of SNP:
|
SNP ID:
sf0216505071(Gbrowse)
Chromosome: chr02 Position: 16505071 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.11% | 13.89% |
| All Indica | 798 | 81.20% | 18.80% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 77.01% | 22.99% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216505071 | G->A | INTERGENIC | None |