Detailed information of SNP:
|
SNP ID:
sf0216506012(Gbrowse)
Chromosome: chr02 Position: 16506012 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.87% | 45.13% |
| All Indica | 798 | 78.57% | 21.43% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 75.40% | 24.60% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216506012 | A->G | INTERGENIC | None |