Detailed information of SNP:
|
SNP ID:
sf0216506489(Gbrowse)
Chromosome: chr02 Position: 16506489 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.08% | 44.92% |
| All Indica | 799 | 78.85% | 21.15% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216506489 | A->T | INTERGENIC | None |