Detailed information of SNP:
|
SNP ID:
sf0216519312(Gbrowse)
Chromosome: chr02 Position: 16519312 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 78.56% | 21.44% |
| All Indica | 793 | 69.23% | 30.77% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 371 | 64.42% | 35.58% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216519312 | G->A | LOC_Os02g27920(LOC_Os02g27920.1) | INTRON |