Detailed information of SNP:
|
SNP ID:
sf0216519431(Gbrowse)
Chromosome: chr02 Position: 16519431 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 51.96% | 48.04% |
| All Indica | 763 | 75.62% | 24.38% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 61 | 60.66% | 39.34% |
| Indica I | 368 | 74.73% | 25.27% |
| Indica II | 192 | 62.50% | 37.50% |
| Indica Intermediate | 203 | 89.66% | 10.34% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216519431 | T->C | LOC_Os02g27920(LOC_Os02g27920.1) | INTRON |