Detailed information of SNP:
|
SNP ID:
sf0216522576(Gbrowse)
Chromosome: chr02 Position: 16522576 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.06% | 39.94% |
| All Indica | 798 | 82.46% | 17.54% |
| All Japonica | 496 | 17.74% | 82.26% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216522576 | C->T | INTERGENIC | None |