Detailed information of SNP:
|
SNP ID:
sf0216530716(Gbrowse)
Chromosome: chr02 Position: 16530716 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 92.04% | 7.96% |
| All Indica | 779 | 86.52% | 13.48% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 360 | 78.33% | 21.67% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216530716 | G->A | INTERGENIC | None |