Detailed information of SNP:
|
SNP ID:
sf0216541603(Gbrowse)
Chromosome: chr02 Position: 16541603 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1269 | 50.83% | 49.17% |
| All Indica | 671 | 75.26% | 24.74% |
| All Japonica | 486 | 13.79% | 86.21% |
| Aus | 61 | 67.21% | 32.79% |
| Indica I | 314 | 72.61% | 27.39% |
| Indica II | 180 | 64.44% | 35.56% |
| Indica Intermediate | 177 | 90.96% | 9.04% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 83 | 62.65% | 37.35% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216541603 | T->G | INTERGENIC | None |