Detailed information of SNP:
|
SNP ID:
sf0216556908(Gbrowse)
Chromosome: chr02 Position: 16556908 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1217 | 64.50% | 35.50% |
| All Indica | 634 | 98.11% | 1.89% |
| All Japonica | 495 | 16.97% | 83.03% |
| Aus | 42 | 100.00% | 0.00% |
| Indica I | 282 | 98.94% | 1.06% |
| Indica II | 152 | 95.39% | 4.61% |
| Indica Intermediate | 200 | 99.00% | 1.00% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 33 | 75.76% | 24.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216556908 | T->C | INTERGENIC | None |