Detailed information of SNP:
|
SNP ID:
sf0216558463(Gbrowse)
Chromosome: chr02 Position: 16558463 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 50.14% | 49.86% |
| All Indica | 779 | 71.89% | 28.11% |
| All Japonica | 496 | 16.53% | 83.47% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 373 | 69.44% | 30.56% |
| Indica II | 204 | 62.25% | 37.75% |
| Indica Intermediate | 202 | 86.14% | 13.86% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216558463 | A->G | INTERGENIC | None |