Detailed information of SNP:
|
SNP ID:
sf0216559100(Gbrowse)
Chromosome: chr02 Position: 16559100 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.56% | 46.44% |
| All Indica | 798 | 77.19% | 22.81% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 374 | 74.06% | 25.94% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216559100 | G->A | INTERGENIC | None |