Detailed information of SNP:
|
SNP ID:
sf0216559253(Gbrowse)
Chromosome: chr02 Position: 16559253 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 93.81% | 6.19% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 454 | 81.72% | 18.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 78.90% | 21.10% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 54 | 70.37% | 29.63% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216559253 | C->A | INTERGENIC | None |