Detailed information of SNP:
|
SNP ID:
sf0216562212(Gbrowse)
Chromosome: chr02 Position: 16562212 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.92% | 49.08% |
| All Indica | 796 | 30.15% | 69.85% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 373 | 31.10% | 68.90% |
| Indica II | 212 | 43.40% | 56.60% |
| Indica Intermediate | 211 | 15.17% | 84.83% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216562212 | C->T | INTERGENIC | None |