Detailed information of SNP:
|
SNP ID:
sf0216562351(Gbrowse)
Chromosome: chr02 Position: 16562351 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 59.06% | 40.94% |
| All Indica | 784 | 81.76% | 18.24% |
| All Japonica | 496 | 15.93% | 84.07% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 363 | 82.09% | 17.91% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216562351 | T->C | INTERGENIC | None |