Detailed information of SNP:
|
SNP ID:
sf0216563503(Gbrowse)
Chromosome: chr02 Position: 16563503 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 66.15% | 33.85% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216563503 | C->A | INTERGENIC | None |