Detailed information of SNP:
|
SNP ID:
sf0216586993(Gbrowse)
Chromosome: chr02 Position: 16586993 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 82.54% | 17.46% |
| All Indica | 767 | 69.23% | 30.77% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 75.70% | 24.30% |
| Indica II | 205 | 66.83% | 33.17% |
| Indica Intermediate | 204 | 60.29% | 39.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216586993 | G->A | LOC_Os02g28020(LOC_Os02g28020.1) | Synonymous |