Detailed information of SNP:
|
SNP ID:
sf0216588639(Gbrowse)
Chromosome: chr02 Position: 16588639 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 86.76% | 13.24% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 432 | 62.27% | 37.73% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 291 | 46.74% | 53.26% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 56 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216588639 | A->G | LOC_Os02g28020(LOC_Os02g28020.1) | Non-Synonymous SNP |