Detailed information of SNP:



SNP ID: sf0216588639(Gbrowse)

Chromosome: chr02

Position: 16588639
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1352 86.76% 13.24%
All Indica799 99.37% 0.63%
All Japonica432 62.27% 37.73%
Aus67 85.07% 14.93%
Indica I375 99.73% 0.27%
Indica II213 99.06% 0.94%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica291 46.74% 53.26%
Tropical Japonica85 98.82% 1.18%
Japonica Intermediate56 87.50% 12.50%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 97.50% 2.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216588639 A->G LOC_Os02g28020(LOC_Os02g28020.1) Non-Synonymous SNP