Detailed information of SNP:
|
SNP ID:
sf0216588804(Gbrowse)
Chromosome: chr02 Position: 16588804 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1317 | 73.96% | 26.04% |
| All Indica | 702 | 55.41% | 44.59% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 71.88% | 28.12% |
| Indica I | 336 | 55.06% | 44.94% |
| Indica II | 176 | 51.14% | 48.86% |
| Indica Intermediate | 190 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216588804 | T->C | LOC_Os02g28020(LOC_Os02g28020.1) | Non-Synonymous SNP |