Detailed information of SNP:
|
SNP ID:
sf0216588815(Gbrowse)
Chromosome: chr02 Position: 16588815 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 90.58% | 9.42% |
| All Indica | 767 | 85.92% | 14.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 77.42% | 22.58% |
| Indica I | 359 | 81.06% | 18.94% |
| Indica II | 202 | 82.67% | 17.33% |
| Indica Intermediate | 206 | 97.57% | 2.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216588815 | C->T | LOC_Os02g28020(LOC_Os02g28020.1) | Synonymous |