Detailed information of SNP:
|
SNP ID:
sf0216589003(Gbrowse)
Chromosome: chr02 Position: 16589003 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 71.12% | 28.88% |
| All Indica | 741 | 52.36% | 47.64% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 343 | 55.69% | 44.31% |
| Indica II | 197 | 42.13% | 57.87% |
| Indica Intermediate | 201 | 56.72% | 43.28% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216589003 | C->T | LOC_Os02g28020(LOC_Os02g28020.1) | Non-Synonymous SNP |