Detailed information of SNP:
|
SNP ID:
sf0216590051(Gbrowse)
Chromosome: chr02 Position: 16590051 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.96% | 41.04% |
| All Indica | 798 | 33.08% | 66.92% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 39.47% | 60.53% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 210 | 38.10% | 61.90% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216590051 | T->C | INTERGENIC | None |