Detailed information of SNP:
|
SNP ID:
sf0216594200(Gbrowse)
Chromosome: chr02 Position: 16594200 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 73.73% | 26.27% |
| All Indica | 793 | 68.98% | 31.02% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 370 | 61.89% | 38.11% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216594200 | T->G | INTERGENIC | None |