Detailed information of SNP:
|
SNP ID:
sf0216595873(Gbrowse)
Chromosome: chr02 Position: 16595873 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.31% | 38.69% |
| All Indica | 799 | 36.80% | 63.20% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 40.27% | 59.73% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216595873 | C->T | INTERGENIC | None |