Detailed information of SNP:
|
SNP ID:
sf0216609266(Gbrowse)
Chromosome: chr02 Position: 16609266 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.58% | 24.42% |
| All Indica | 798 | 73.43% | 26.57% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216609266 | C->A | INTERGENIC | None |