Detailed information of SNP:
|
SNP ID:
sf0216610134(Gbrowse)
Chromosome: chr02 Position: 16610134 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 92.04% | 7.96% |
| All Indica | 716 | 85.61% | 14.39% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 88.66% | 11.34% |
| Indica II | 193 | 84.97% | 15.03% |
| Indica Intermediate | 179 | 80.45% | 19.55% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216610134 | G->A | LOC_Os02g28050(LOC_Os02g28050.1) | INTRON |