Detailed information of SNP:
|
SNP ID:
sf0216610229(Gbrowse)
Chromosome: chr02 Position: 16610229 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1337 | 83.47% | 16.53% |
| All Indica | 743 | 82.91% | 17.09% |
| All Japonica | 484 | 86.98% | 13.02% |
| Aus | 56 | 66.07% | 33.93% |
| Indica I | 336 | 76.49% | 23.51% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 199 | 84.42% | 15.58% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 84 | 35.71% | 64.29% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216610229 | G->A | LOC_Os02g28050(LOC_Os02g28050.1) | INTRON |