Detailed information of SNP:
|
SNP ID:
sf0216610572(Gbrowse)
Chromosome: chr02 Position: 16610572 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 80.60% | 19.40% |
| All Indica | 787 | 79.92% | 20.08% |
| All Japonica | 495 | 85.45% | 14.55% |
| Aus | 61 | 52.46% | 47.54% |
| Indica I | 369 | 73.98% | 26.02% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 207 | 79.23% | 20.77% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 34.78% | 65.22% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216610572 | C->T | INTERGENIC | None |