Detailed information of SNP:
|
SNP ID:
sf0216610803(Gbrowse)
Chromosome: chr02 Position: 16610803 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 75.44% | 24.56% |
| All Indica | 797 | 73.02% | 26.98% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216610803 | G->T | INTERGENIC | None |