Detailed information of SNP:
|
SNP ID:
sf0216615392(Gbrowse)
Chromosome: chr02 Position: 16615392 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.87% | 45.13% |
| All Indica | 796 | 28.02% | 71.98% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 35.47% | 64.53% |
| Indica II | 210 | 15.24% | 84.76% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216615392 | C->T | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216615392 | C->T | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |