Detailed information of SNP:
|
SNP ID:
sf0216616433(Gbrowse)
Chromosome: chr02 Position: 16616433 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 75.53% | 24.47% |
| All Indica | 798 | 73.31% | 26.69% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216616433 | A->G | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216616433 | A->G | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |