Detailed information of SNP:
|
SNP ID:
sf0216617174(Gbrowse)
Chromosome: chr02 Position: 16617174 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.72% | 30.28% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 496 | 17.14% | 82.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216617174 | A->C | LOC_Os02g28074(LOC_Os02g28074.1) | Non-Synonymous SNP |
| sf0216617174 | A->C | LOC_Os02g28074(LOC_Os02g28074.2) | Non-Synonymous SNP |