Detailed information of SNP:
|
SNP ID:
sf0216618505(Gbrowse)
Chromosome: chr02 Position: 16618505 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.24% | 46.76% |
| All Indica | 798 | 77.07% | 22.93% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 74.33% | 25.67% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216618505 | A->G | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216618505 | A->G | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |