Detailed information of SNP:
|
SNP ID:
sf0216619349(Gbrowse)
Chromosome: chr02 Position: 16619349 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.99% | 16.01% |
| All Indica | 799 | 78.60% | 21.40% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216619349 | C->T | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216619349 | C->T | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |