Detailed information of SNP:
|
SNP ID:
sf0216619455(Gbrowse)
Chromosome: chr02 Position: 16619455 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 84.82% | 15.18% |
| All Indica | 798 | 78.82% | 21.18% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 74.33% | 25.67% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216619455 | C->T | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216619455 | C->T | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |