Detailed information of SNP:
|
SNP ID:
sf0216619597(Gbrowse)
Chromosome: chr02 Position: 16619597 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.87% | 45.13% |
| All Indica | 799 | 27.78% | 72.22% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 35.73% | 64.27% |
| Indica II | 213 | 15.49% | 84.51% |
| Indica Intermediate | 211 | 26.07% | 73.93% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216619597 | T->C | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216619597 | T->C | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |