Detailed information of SNP:
|
SNP ID:
sf0216619776(Gbrowse)
Chromosome: chr02 Position: 16619776 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 52.26% | 47.74% |
| All Indica | 797 | 75.16% | 24.84% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 71.47% | 28.53% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216619776 | C->T | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216619776 | C->T | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |