Detailed information of SNP:
|
SNP ID:
sf0216620069(Gbrowse)
Chromosome: chr02 Position: 16620069 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.20% | 45.80% |
| All Indica | 797 | 78.04% | 21.96% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 75.40% | 24.60% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216620069 | A->G | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216620069 | A->G | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |