Detailed information of SNP:
|
SNP ID:
sf0216621926(Gbrowse)
Chromosome: chr02 Position: 16621926 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 52.43% | 47.57% |
| All Indica | 797 | 75.78% | 24.22% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 73.26% | 26.74% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216621926 | C->G | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216621926 | C->G | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |