Detailed information of SNP:
|
SNP ID:
sf0216622043(Gbrowse)
Chromosome: chr02 Position: 16622043 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.57% | 37.43% |
| All Indica | 796 | 38.94% | 61.06% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 373 | 41.02% | 58.98% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 210 | 44.76% | 55.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216622043 | C->T | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216622043 | C->T | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |