Detailed information of SNP:
|
SNP ID:
sf0216623924(Gbrowse)
Chromosome: chr02 Position: 16623924 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.10% | 46.90% |
| All Indica | 798 | 76.82% | 23.18% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 73.53% | 26.47% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216623924 | G->A | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216623924 | G->A | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |