Detailed information of SNP:
|
SNP ID:
sf0216625679(Gbrowse)
Chromosome: chr02 Position: 16625679 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 50.74% | 49.26% |
| All Indica | 793 | 72.64% | 27.36% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 69.52% | 30.48% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216625679 | C->T | LOC_Os02g28074(LOC_Os02g28074.1) | INTRON |
| sf0216625679 | C->T | LOC_Os02g28074(LOC_Os02g28074.2) | INTRON |