Detailed information of SNP:
|
SNP ID:
sf0216627369(Gbrowse)
Chromosome: chr02 Position: 16627369 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 96.04% | 3.96% |
| All Indica | 777 | 93.44% | 6.56% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 361 | 89.75% | 10.25% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216627369 | G->A | LOC_Os02g28074(LOC_Os02g28074.1) | Synonymous |
| sf0216627369 | G->A | LOC_Os02g28074(LOC_Os02g28074.2) | Synonymous |