Detailed information of SNP:
|
SNP ID:
sf0216630209(Gbrowse)
Chromosome: chr02 Position: 16630209 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 95.74% | 4.26% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 487 | 89.32% | 10.68% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 47.67% | 52.33% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216630209 | A->G | INTERGENIC | None |