Detailed information of SNP:
|
SNP ID:
sf0216635974(Gbrowse)
Chromosome: chr02 Position: 16635974 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 82.81% | 17.19% |
| All Indica | 784 | 76.15% | 23.85% |
| All Japonica | 487 | 95.48% | 4.52% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 365 | 67.40% | 32.60% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 209 | 76.08% | 23.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 85 | 80.00% | 20.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216635974 | G->A | INTERGENIC | None |