Detailed information of SNP:
|
SNP ID:
sf0216638340(Gbrowse)
Chromosome: chr02 Position: 16638340 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 63.53% | 36.47% |
| All Indica | 784 | 89.16% | 10.84% |
| All Japonica | 495 | 16.77% | 83.23% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 367 | 88.01% | 11.99% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216638340 | T->C | INTERGENIC | None |