Detailed information of SNP:
|
SNP ID:
sf0216640189(Gbrowse)
Chromosome: chr02 Position: 16640189 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 90.22% | 9.78% |
| All Indica | 778 | 92.16% | 7.84% |
| All Japonica | 491 | 90.22% | 9.78% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 360 | 93.06% | 6.94% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 54.55% | 45.45% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216640189 | A->G | INTERGENIC | None |