Detailed information of SNP:
|
SNP ID:
sf0216640264(Gbrowse)
Chromosome: chr02 Position: 16640264 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 55.78% | 44.22% |
| All Indica | 762 | 40.29% | 59.71% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 352 | 47.73% | 52.27% |
| Indica II | 206 | 27.67% | 72.33% |
| Indica Intermediate | 204 | 40.20% | 59.80% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216640264 | A->G | INTERGENIC | None |