Detailed information of SNP:
|
SNP ID:
sf0216640637(Gbrowse)
Chromosome: chr02 Position: 16640637 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 64.94% | 35.06% |
| All Indica | 793 | 92.06% | 7.94% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 372 | 91.94% | 8.06% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216640637 | G->T | INTERGENIC | None |